Domain ID e3kk3B5

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: RNaseH-like domain in reverse transcriptase
  • T: RNaseH-like domain in reverse transcriptase
  • F: RVT_connect
UID: 001257266
Type: Automatic domain
Parent: e2zd1B3
Range: B:305-430
PDB: 3kk3
PDB Description: Reverse transcriptase p51 subunit
UniProt: P04585
Species:

Structure of domain e3kk3B5

Domains in the same chain:

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e3kk3B6 B:4-230 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3kk3B4 B:231-304 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3kk3B5 B:305-430 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e3kk3A8 A:1-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3kk3A7 A:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3kk3A5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e3kk3A6 A:429-555 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3kk3B6 B:4-230 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3kk3B4 B:231-304 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3kk3B5 B:305-430 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e3kk3B5 of H-group "RNaseH-like domain in reverse transcriptase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3kk3A5 B:x,y,z->A:X,Y,Z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3kk3A6 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e3kk3A7 B:-X+1/2,-Y+3/2,Z-1/2->A:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3kk3B5 B:x,y,z->B:-X+1,Y,-Z+1/2 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3kk3B4 B:x,y,z->B:-X+1,Y,-Z+1/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3kk3B5 B:-X+1,Y,-Z+1/2->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3kk3B4 B:-X+1,Y,-Z+1/2->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol