Domain ID e3koxB1

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Class I glutamine amidotransferase-like
  • T: CheY-like
  • F: B12-binding
UID: 001337999
Type: Automatic domain
Parent: e3bulA3
Range: B:591-740
Ligands: B12 Z98
PDB: 3kox
PDB Description: D-ornithine aminomutase E component
UniProt: E3PY95
Species: [Clostridium] sticklandii

Structure of domain e3koxB1

Domains in the same chain:

e3koxB3 B:5-506 TIM beta/alpha-barrel TIM barrels TIM barrels
e3koxB5 B:509-587 Dodecin subunit-like D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
e3koxB1 B:591-740 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like

Domains in the same PDB:

e3koxA3 A:5-506 TIM beta/alpha-barrel TIM barrels TIM barrels
e3koxA5 A:509-587 Dodecin subunit-like D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
e3koxA1 A:591-740 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3koxB3 B:5-506 TIM beta/alpha-barrel TIM barrels TIM barrels
e3koxB5 B:509-587 Dodecin subunit-like D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
e3koxB1 B:591-740 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3koxC3 C:5-506 TIM beta/alpha-barrel TIM barrels TIM barrels
e3koxC5 C:509-587 Dodecin subunit-like D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
e3koxC1 C:591-740 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3koxD3 D:5-506 TIM beta/alpha-barrel TIM barrels TIM barrels
e3koxD5 D:509-587 Dodecin subunit-like D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
e3koxD1 D:591-740 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3koxE1 E:6-114 D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related
e3koxF1 F:6-114 D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related
e3koxG1 G:6-114 D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related
e3koxH1 H:6-114 D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related

Structural contacts of domain e3koxB1 of H-group "Class I glutamine amidotransferase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3koxD3 B:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e3koxD3 B:X-1,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e3koxA5 B:x,y,z->A:-X,Y-1/2,-Z D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain Interaction Interface Pymol
e3koxA3 B:x,y,z->A:-X,Y-1/2,-Z TIM barrels Interaction Interface Pymol
e3koxC1 B:x,y,z->C:-X,Y-1/2,-Z Class I glutamine amidotransferase-like Interaction Interface Pymol