Domain ID e3kq4A2

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: Unmapped domains
UID: 001147790
Type: Manual and representative domain
Range: A:308-417
Ligands: B12 NAG
PDB: 3kq4
PDB Description: Gastric intrinsic factor
UniProt: P27352
Hsap BLAST neighbor: P27352
Species: Homo sapiens

Structure of domain e3kq4A2

Domains in the same chain:

e3kq4A1 A:25-299 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e3kq4A2 A:308-417 beta-Grasp Ubiquitin-related Ubiquitin-like

Domains in the same PDB:

e3kq4A1 A:25-299 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e3kq4A2 A:308-417 beta-Grasp Ubiquitin-related Ubiquitin-like
e3kq4B1 B:932-1042 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3kq4B3 B:1046-1163 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3kq4B2 B:1165-1277 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3kq4B4 B:1279-1388 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3kq4C3 C:25-299 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e3kq4C2 C:308-417 beta-Grasp Ubiquitin-related Ubiquitin-like
e3kq4D2 D:932-1042 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3kq4D3 D:1045-1163 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3kq4D1 D:1165-1277 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3kq4D4 D:1279-1388 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3kq4E3 E:25-299 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e3kq4E2 E:308-417 beta-Grasp Ubiquitin-related Ubiquitin-like
e3kq4F2 F:932-1042 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3kq4F3 F:1045-1163 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3kq4F1 F:1165-1277 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3kq4F4 F:1279-1388 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain

Structural contacts of domain e3kq4A2 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3kq4B4 A:X,Y,Z->B:x,y,z Spermadhesin, CUB domain Interaction Interface Pymol
e3kq4F3 A:X,Y,Z->F:x,y,z Spermadhesin, CUB domain Interaction Interface Pymol
e3kq4E3 A:X,Y,Z->E:x,y,z alpha/alpha toroid Interaction Interface Pymol