ECOD: domain e3ksdR2

Domain ID e3ksdR2

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: NAD(P)-binding Rossmann-fold domains
F: Gp_dh_N

UID:	000397714
Type:	Automatic domain
Parent:	e2g82A2
Range:	R:1-150,R:316-333
Ligands:	NAD
PDB:	3ksd
PDB Description:	Glyceraldehyde-3-phosphate dehydrogenase 1
UniProt:	Q6GIL8
Hsap BLAST neighbor:	P04406
Species:

Domains in the same chain:

Download Pymol

e3ksdR2	R:1-150,R:316-333	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e3ksdR1	R:151-315	FwdE/GAPDH domain-like	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain

Domains in the same PDB:

e3ksdO2	O:2-150,O:316-334	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e3ksdO1	O:151-315	FwdE/GAPDH domain-like	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3ksdP2	P:2-150,P:316-335	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e3ksdP1	P:151-315	FwdE/GAPDH domain-like	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3ksdQ2	Q:2-150,Q:316-334	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e3ksdQ1	Q:151-315	FwdE/GAPDH domain-like	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3ksdR2	R:1-150,R:316-333	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e3ksdR1	R:151-315	FwdE/GAPDH domain-like	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain

Structural contacts of domain e3ksdR2 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3ksdO1	R:x,y,z->O:X,Y,Z	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Interaction Interface Pymol
e3ksdQ2	R:-X,Y-1/2,-Z->Q:x,y,z	Rossmann-related	Interaction Interface Pymol
e3ksdQ1	R:-X,Y-1/2,-Z->Q:x,y,z	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Interaction Interface Pymol
e3ksdP1	R:x,y,z->P:X,Y,Z	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Interaction Interface Pymol
e3ksdO2	R:X-1,Y,Z->O:x,y,z	Rossmann-related	Interaction Interface Pymol
e3ksdP2	R:-X+1,Y-1/2,-Z+1->P:x,y,z	Rossmann-related	Interaction Interface Pymol
e3ksdP1	R:-X+1,Y-1/2,-Z+1->P:x,y,z	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Interaction Interface Pymol
e3ksdR1	R:-X+1,Y-1/2,-Z->R:x,y,z	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Interaction Interface Pymol
e3ksdO1	R:-X+1,Y-1/2,-Z+1->O:x,y,z	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Interaction Interface Pymol