ECOD: domain e3lssB2

Domain ID e3lssB2

A: alpha bundles
X: Long alpha-hairpin
H: tRNA-binding arm
T: tRNA-binding arm
F: Seryl_tRNA_N

UID:	001138578
Type:	Automatic domain
Parent:	e1setA1
Range:	B:-2-88,B:108-145
PDB:	3lss
PDB Description:	Seryl-tRNA synthetase
UniProt:	Q384V4
Hsap BLAST neighbor:	P49591
Species:	Trypanosoma brucei

Domain
In chain context
In PDB context

Structure of domain e3lssB2

Domains in the same chain:

Download Pymol

e3lssB2	B:-2-88,B:108-145	Long alpha-hairpin	tRNA-binding arm	tRNA-binding arm
e3lssB1	B:146-465	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases

Domains in the same PDB:

e3lssA3	A:-2-71,A:100-145	Long alpha-hairpin	tRNA-binding arm	tRNA-binding arm
e3lssA2	A:146-467	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e3lssB2	B:-2-88,B:108-145	Long alpha-hairpin	tRNA-binding arm	tRNA-binding arm
e3lssB1	B:146-465	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases

Structural contacts of domain e3lssB2 of H-group "tRNA-binding arm":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3lssA3	B:x,y,z->A:X-Y+1/3,-Y+2/3,-Z+2/3	tRNA-binding arm	Interaction Interface Pymol
e3lssA2	B:x,y,z->A:X-Y+1/3,-Y+2/3,-Z+2/3	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e3lssA3	B:x,y,z->A:Y,X,-Z+1	tRNA-binding arm	Interaction Interface Pymol
e3lssA2	B:Y-2/3,X-1/3,-Z+2/3->A:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol