ECOD: domain e3lx1A2

Domain ID e3lx1A2

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: PCNA_C

UID:	000142181
Type:	Automatic domain
Parent:	e1iz5A2
Range:	A:123-247
Ligands:	SO4
PDB:	3lx1
PDB Description:	DNA polymerase sliding clamp 1
UniProt:	Q5JF32
Hsap BLAST neighbor:	P12004
Species:	Thermococcus kodakarensis

Domains in the same chain:

Download Pymol

e3lx1A1	A:2-122	DNA clamp	DNA clamp	DNA clamp
e3lx1A2	A:123-247	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e3lx1A1	A:2-122	DNA clamp	DNA clamp	DNA clamp
e3lx1A2	A:123-247	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e3lx1A2 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3lx1A1	A:x,y,z->A:-Y,X-Y+1,Z	DNA clamp	Interaction Interface Pymol
e3lx1A1	A:x,y,z->A:-X-1,-Y,Z-1/2	DNA clamp	Interaction Interface Pymol
e3lx1A1	A:-X-1,-Y,Z-1/2->A:x,y,z	DNA clamp	Interaction Interface Pymol
e3lx1A1	A:-Y-1,X-Y,Z->A:x,y,z	DNA clamp	Interaction Interface Pymol
e3lx1A2	A:x,y,z->A:X-Y,X,Z+1/2	DNA clamp	Interaction Interface Pymol
e3lx1A2	A:X-Y,X,Z+1/2->A:x,y,z	DNA clamp	Interaction Interface Pymol