Domain ID e3m6aD4

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: AAA
UID: 001602123
Type: Automatic domain
Parent: e1lv7A2
Range: D:246-382,D:403-489
Ligands: ADP
PDB: 3m6a
PDB Description: ATP-dependent protease La 1
UniProt: P37945
Hsap BLAST neighbor: Q86WA8
Species:

Structure of domain e3m6aD4

Domains in the same chain:

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e3m6aD4 D:246-382,D:403-489 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3m6aD2 D:490-584 Histone-like Histone-related AAA+ ATPase lid domain
e3m6aD1 D:585-694 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m6aD3 D:695-770 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains

Domains in the same PDB:

e3m6aA4 A:246-382,A:403-489 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3m6aA2 A:490-584 Histone-like Histone-related AAA+ ATPase lid domain
e3m6aA1 A:585-694 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m6aA3 A:695-770 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e3m6aB4 B:246-382,B:403-489 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3m6aB2 B:490-584 Histone-like Histone-related AAA+ ATPase lid domain
e3m6aB1 B:585-694 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m6aB3 B:695-770 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e3m6aC4 C:246-382,C:403-489 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3m6aC2 C:490-584 Histone-like Histone-related AAA+ ATPase lid domain
e3m6aC1 C:585-694 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m6aC3 C:695-770 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e3m6aD4 D:246-382,D:403-489 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3m6aD2 D:490-584 Histone-like Histone-related AAA+ ATPase lid domain
e3m6aD1 D:585-694 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m6aD3 D:695-770 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e3m6aE4 E:246-382,E:403-489 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3m6aE2 E:490-584 Histone-like Histone-related AAA+ ATPase lid domain
e3m6aE1 E:585-694 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m6aE3 E:695-770 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e3m6aF4 F:246-382,F:403-489 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3m6aF2 F:490-584 Histone-like Histone-related AAA+ ATPase lid domain
e3m6aF1 F:585-694 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m6aF3 F:695-770 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains

Structural contacts of domain e3m6aD4 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3m6aA2 D:x,y,z->A:X,Y,Z Histone-related Interaction Interface Pymol
e3m6aC4 D:x,y,z->C:-X+1,Y-1/2,-Z P-loop domains-related Interaction Interface Pymol
e3m6aC2 D:x,y,z->C:-X+1,Y-1/2,-Z Histone-related Interaction Interface Pymol
e3m6aA1 D:X-1,Y,Z->A:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol