Domain ID e3m8lA1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: Capsid protein protrusion (P) domain
  • T: Capsid protein protrusion (P) domain
  • F: Unmapped domains
UID: 001696240
Type: Automatic and representative domain
Parent: e2gh8A3
Range: A:388-550
PDB: 3m8l
PDB Description: Capsid protein
UniProt: A7L692
Species: Feline calicivirus

Structure of domain e3m8lA1

Domains in the same chain:

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e3m8lA3 A:129-327 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3m8lA2 A:328-387,A:551-662 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3m8lA1 A:388-550 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Domains in the same PDB:

e3m8lA3 A:129-327 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3m8lA2 A:328-387,A:551-662 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3m8lA1 A:388-550 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3m8lB2 B:133-327 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3m8lB3 B:328-387,B:551-662 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3m8lB1 B:388-550 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3m8lC2 C:129-327 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3m8lC1 C:328-387,C:551-662 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3m8lC3 C:388-550 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Structural contacts of domain e3m8lA1 of H-group "Capsid protein protrusion (P) domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3m8lC3 A:X,Y,Z->C:x,y,z Capsid protein protrusion (P) domain Interaction Interface Pymol
e3m8lC1 A:X,Y,Z->C:x,y,z Capsid protein protrusion (P) domain Interaction Interface Pymol