ECOD: domain e3m8uA2

Domain ID e3m8uA2

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: SBP_bac_5

UID:	001521541
Type:	Automatic domain
Parent:	e1dpeA4
Range:	A:286-501
Ligands:	GDS MLI
PDB:	3m8u
PDB Description:	HEME-BINDING PROTEIN A
UniProt:	B8F653
Species:

Domains in the same chain:

Download Pymol

e3m8uA4	A:24-39,A:181-285,A:502-531	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3m8uA3	A:63-180	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e3m8uA2	A:286-501	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e3m8uA4	A:24-39,A:181-285,A:502-531	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3m8uA3	A:63-180	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e3m8uA2	A:286-501	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e3m8uA2 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3m8uA4	A:x,y,z->A:X-1/2,-Y-1/2,-Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3m8uA2	A:x,y,z->A:X-1/2,-Y-1/2,-Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3m8uA4	A:X-1/2,-Y-1/2,-Z->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3m8uA2	A:X-1/2,-Y-1/2,-Z->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3m8uA3	A:x,y,z->A:-X,Y-1/2,-Z-1/2	Oligo-peptide binding protein (OPPA) insertion domain	Interaction Interface Pymol
e3m8uA3	A:-X+1/2,-Y-1,Z-1/2->A:x,y,z	Oligo-peptide binding protein (OPPA) insertion domain	Interaction Interface Pymol