Domain ID e3m9sF1

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Class I glutamine amidotransferase-like
  • T: CheY-like
  • F: Oxidored_q6
UID: 000391999
Type: Automatic domain
Parent: e1ublS3
Range: F:15-175
Ligands: SF4
PDB: 3m9s
PDB Description: NADH-QUINONE OXIDOREDUCTASE SUBUNIT B
UniProt: Q56218
Hsap BLAST neighbor: O75251
Species:

Structure of domain e3m9sF1

Domains in the same chain:

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e3m9sF1 F:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like

Domains in the same PDB:

e3m9s13 1:2-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e3m9s12 1:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e3m9s11 1:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e3m9s22 2:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e3m9s21 2:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e3m9s34 3:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3m9s39 3:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3m9s37 3:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3m9s310 3:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3m9s36 3:305-379,3:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3m9s35 3:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3m9s38 3:686-777 cradle loop barrel RIFT-related double psi
e3m9s45 4:26-64,4:374-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3m9s44 4:65-107,4:301-373 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3m9s46 4:108-300 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3m9s51 5:1-196 Nqo5-like Nqo5-like Nqo5-like
e3m9s61 6:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3m9s71 7:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like
e3m9s91 9:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3m9sA3 A:2-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e3m9sA2 A:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e3m9sA1 A:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e3m9sB2 B:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e3m9sB1 B:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e3m9sC4 C:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3m9sC9 C:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3m9sC7 C:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3m9sC10 C:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3m9sC6 C:305-379,C:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3m9sC5 C:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3m9sC8 C:686-777 cradle loop barrel RIFT-related double psi
e3m9sD5 D:26-64,D:374-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3m9sD4 D:65-107,D:301-373 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3m9sD6 D:108-300 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3m9sE1 E:1-196 Nqo5-like Nqo5-like Nqo5-like
e3m9sF1 F:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3m9sG1 G:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3m9sJ1 J:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like

Structural contacts of domain e3m9sF1 of H-group "Class I glutamine amidotransferase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3m9sG1 F:X,Y,Z->G:x,y,z 4Fe-4S ferredoxin Interaction Interface Pymol
e3m9sD5 F:x,y,z->D:X,Y,Z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3m9sD4 F:x,y,z->D:X,Y,Z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3m9sD6 F:x,y,z->D:X,Y,Z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e3m9s36 F:x,y,z->3:X,Y,Z Formate dehydrogenase/DMSO reductase, domains 2 and 3 Interaction Interface Pymol
e3m9s35 F:x,y,z->3:X,Y,Z Formate dehydrogenase/DMSO reductase, domains 2 and 3 Interaction Interface Pymol
e3m9sE1 F:x,y,z->E:X,Y,Z Nqo5-like Interaction Interface Pymol