| UID: | 000139115 |
|---|---|
| Type: | Automatic domain |
| Parent: | e2b0gA1 |
| Range: | A:75-153 |
| Ligands: | GOL SO4 |
| PDB: | 3md3 |
| PDB Description: | Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 |
| UniProt: | P32588 |
| Hsap BLAST neighbor: | Q5JQF8 |
| Species: | Saccharomyces cerevisiae |
Structure of domain e3md3A1
Domains in the same chain:
| e3md3A1 | A:75-153 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
| e3md3A2 | A:154-240 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
Domains in the same PDB:
| e3md3A1 | A:75-153 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
| e3md3A2 | A:154-240 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
Structural contacts of domain e3md3A1 of H-group "RNA-binding domain, RBD":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3md3A1 | A:x,y,z->A:-Y-1,-X-1,-Z-1/6 | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3md3A2 | A:x,y,z->A:-Y-1,-X-1,-Z-1/6 | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3md3A2 | A:-Y-1,-X-1,-Z-1/6->A:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3md3A1 | A:-Y-1,-X-1,-Z-1/6->A:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3md3A1 | A:x,y,z->A:-X-2,-X+Y-1,-Z-1/3 | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3md3A1 | A:-X-2,-X+Y-1,-Z-1/3->A:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3md3A2 | A:X-Y,X,Z+1/6->A:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
