Domain ID e3mdjA4

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  • A: mixed a+b and a/b
  • X: Zincin-like
  • H: Metalloproteases ("zincins") catalytic domain
  • T: Metalloproteases ("zincins") catalytic domain
  • F: Peptidase_M1
UID: 001311169
Type: Automatic domain
Parent: e1z5hA2
Range: A:251-485,A:515-518
Ligands: BES ZN
PDB: 3mdj
PDB Description: Endoplasmic reticulum aminopeptidase 1
UniProt: Q9NZ08
Hsap BLAST neighbor: Q9NZ08
Species: Homo sapiens

Structure of domain e3mdjA4

Domains in the same chain:

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e3mdjA1 A:46-250 Baculovirus p35 protein-related Baculovirus p35 protein-related Baculovirus p35 protein-related
e3mdjA4 A:251-485,A:515-518 Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain
e3mdjA5 A:530-614 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3mdjA2 A:615-934 Repetitive alpha hairpins ARM repeat ARM repeat

Domains in the same PDB:

e3mdjA1 A:46-250 Baculovirus p35 protein-related Baculovirus p35 protein-related Baculovirus p35 protein-related
e3mdjA4 A:251-485,A:515-518 Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain
e3mdjA5 A:530-614 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3mdjA2 A:615-934 Repetitive alpha hairpins ARM repeat ARM repeat
e3mdjB1 B:46-250 Baculovirus p35 protein-related Baculovirus p35 protein-related Baculovirus p35 protein-related
e3mdjB4 B:251-485,B:515-518 Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain
e3mdjB5 B:530-614 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3mdjB2 B:615-934 Repetitive alpha hairpins ARM repeat ARM repeat
e3mdjC1 C:46-250 Baculovirus p35 protein-related Baculovirus p35 protein-related Baculovirus p35 protein-related
e3mdjC4 C:251-485,C:515-518 Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain
e3mdjC5 C:530-614 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3mdjC2 C:615-934 Repetitive alpha hairpins ARM repeat ARM repeat

Structural contacts of domain e3mdjA4 of H-group "Metalloproteases ("zincins") catalytic domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3mdjC5 A:X,Y,Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3mdjB1 A:X,Y,Z-1->B:x,y,z Baculovirus p35 protein-related Interaction Interface Pymol