Domain ID e3mfdB3

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  • A: beta sandwiches
  • X: Penicillin-binding protein associated domain
  • H: Penicillin-binding protein associated domain
  • T: Penicillin-binding protein associated domain
  • F: PBP5_C
UID: 001574404
Type: Automatic domain
Parent: e3becA1
Range: B:266-352
Ligands: EDO
PDB: 3mfd
PDB Description: D-alanyl-D-alanine carboxypeptidase dacB
UniProt: P35150
Species: Bacillus subtilis

Structure of domain e3mfdB3

Domains in the same chain:

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e3mfdB1 B:28-160 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e3mfdB2 B:161-265 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e3mfdB3 B:266-352 Penicillin-binding protein associated domain Penicillin-binding protein associated domain Penicillin-binding protein associated domain

Domains in the same PDB:

e3mfdA1 A:28-159 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e3mfdA2 A:160-265 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e3mfdA3 A:266-353 Penicillin-binding protein associated domain Penicillin-binding protein associated domain Penicillin-binding protein associated domain
e3mfdB1 B:28-160 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e3mfdB2 B:161-265 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e3mfdB3 B:266-352 Penicillin-binding protein associated domain Penicillin-binding protein associated domain Penicillin-binding protein associated domain

Structural contacts of domain e3mfdB3 of H-group "Penicillin-binding protein associated domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3mfdA3 B:x,y,z->A:-Y+1/2,X-1/2,Z-1/4 Penicillin-binding protein associated domain Interaction Interface Pymol