| UID: | 000391150 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1y0zA1 |
| Range: | A:105-384 |
| Ligands: | EDO NI OGA REE |
| PDB: | 3ms5 |
| PDB Description: | Gamma-butyrobetaine dioxygenase |
| UniProt: | O75936 |
| Hsap BLAST neighbor: | O75936 |
| Species: | Homo sapiens |
Structure of domain e3ms5A1
Domains in the same chain:
| e3ms5A2 | A:0-104 | XRCC4, N-terminal domain-like | NE0471 N-terminal domain-like | NE0471 N-terminal domain-like |
| e3ms5A1 | A:105-384 | jelly-roll | Double-stranded beta-helix | Double-stranded beta-helix |
Domains in the same PDB:
| e3ms5A2 | A:0-104 | XRCC4, N-terminal domain-like | NE0471 N-terminal domain-like | NE0471 N-terminal domain-like |
| e3ms5A1 | A:105-384 | jelly-roll | Double-stranded beta-helix | Double-stranded beta-helix |
Structural contacts of domain e3ms5A1 of H-group "Double-stranded beta-helix":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3ms5A2 | A:x,y,z->A:Y,X,-Z+1 | NE0471 N-terminal domain-like | Interaction Interface Pymol |
| e3ms5A1 | A:x,y,z->A:Y,X,-Z+1 | Double-stranded beta-helix | Interaction Interface Pymol |
| e3ms5A2 | A:Y,X,-Z+1->A:x,y,z | NE0471 N-terminal domain-like | Interaction Interface Pymol |
| e3ms5A1 | A:Y,X,-Z+1->A:x,y,z | Double-stranded beta-helix | Interaction Interface Pymol |
| e3ms5A2 | A:x,y,z->A:-X,-X+Y,-Z+1 | NE0471 N-terminal domain-like | Interaction Interface Pymol |
| e3ms5A2 | A:-X,-X+Y,-Z+1->A:x,y,z | NE0471 N-terminal domain-like | Interaction Interface Pymol |
| e3ms5A1 | A:x,y,z->A:X-Y+1/3,-Y+2/3,-Z+2/3 | Double-stranded beta-helix | Interaction Interface Pymol |
| e3ms5A1 | A:X-Y+1/3,-Y+2/3,-Z+2/3->A:x,y,z | Double-stranded beta-helix | Interaction Interface Pymol |
| e3ms5A2 | A:-Y+2/3,X-Y+1/3,Z+1/3->A:x,y,z | NE0471 N-terminal domain-like | Interaction Interface Pymol |
| e3ms5A1 | A:x,y,z->A:-Y,X-Y,Z | Double-stranded beta-helix | Interaction Interface Pymol |
| e3ms5A1 | A:-Y,X-Y,Z->A:x,y,z | Double-stranded beta-helix | Interaction Interface Pymol |
