ECOD: domain e3n9uB1

Domain ID e3n9uB1

A: a+b two layers
X: beta-Grasp
H: Nudix
T: Nudix
F: NUDIX_2

UID:	001289987
Type:	Automatic domain
Parent:	e2cl3A2
Range:	B:27-227
Ligands:	GOL
PDB:	3n9u
PDB Description:	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 5
UniProt:	O43809
Hsap BLAST neighbor:	O43809
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3n9uB1

Domains in the same chain:

Download Pymol

e3n9uB1	B:27-227	beta-Grasp	Nudix	Nudix

Domains in the same PDB:

e3n9uA1	A:22-227	beta-Grasp	Nudix	Nudix
e3n9uB1	B:27-227	beta-Grasp	Nudix	Nudix
e3n9uC1	C:82-177	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e3n9uI1	I:84-175	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD

Structural contacts of domain e3n9uB1 of H-group "Nudix":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3n9uA1	B:x,y,z->A:X,Y,Z	Nudix	Interaction Interface Pymol
e3n9uC1	B:X,Y,Z->C:x,y,z	RNA-binding domain, RBD	Interaction Interface Pymol
e3n9uB1	B:x,y,z->B:-X+1,-Y,Z	Nudix	Interaction Interface Pymol
e3n9uB1	B:-X+1,-Y,Z->B:x,y,z	Nudix	Interaction Interface Pymol
e3n9uC1	B:x,y,z->C:X,Y,Z-1	RNA-binding domain, RBD	Interaction Interface Pymol
e3n9uI1	B:X,Y,Z->I:x,y,z	RNA-binding domain, RBD	Interaction Interface Pymol
e3n9uA1	B:x,y,z->A:X,Y,Z-1	Nudix	Interaction Interface Pymol
e3n9uI1	B:-X+1,-Y,Z->I:x,y,z	RNA-binding domain, RBD	Interaction Interface Pymol
e3n9uI1	B:x,y,z->I:-X+1,-Y,Z-1	RNA-binding domain, RBD	Interaction Interface Pymol
e3n9uA1	B:x,y,z->A:-X+3/2,Y-1/2,-Z+3	Nudix	Interaction Interface Pymol
e3n9uI1	B:x,y,z->I:X,Y,Z-1	RNA-binding domain, RBD	Interaction Interface Pymol
e3n9uB1	B:x,y,z->B:X,Y,Z-1	Nudix	Interaction Interface Pymol
e3n9uB1	B:X,Y,Z-1->B:x,y,z	Nudix	Interaction Interface Pymol