Domain ID e3ndkA4

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 000411026
Type: Automatic domain
Parent: e1ih7A4
Range: A:1-375
Ligands: CA
PDB: 3ndk
PDB Description: DNA POLYMERASE
UniProt: Q38087
Species: Enterobacteria phage RB69

Structure of domain e3ndkA4

Structural contacts of domain e3ndkA4 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ndkA7 A:x,y,z->A:-X,Y-1/2,-Z-1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3ndkA5 A:-X,Y-1/2,-Z-1/2->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3ndkA6 A:-X,Y-1/2,-Z-1/2->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3ndkA7 A:-X+1/2,-Y,Z-1/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3ndkA5 A:X-1,Y,Z->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol