ECOD: domain e3nvkA3

Domain ID e3nvkA3

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: Nop C-terminal domain
F: Nop

UID:	001686311
Type:	Automatic domain
Parent:	e1nt2B2
Range:	A:258-370
Ligands:	SAM
PDB:	3nvk
PDB Description:	NOP5/NOP56 related protein
UniProt:	Q8U4M1
Hsap BLAST neighbor:	O00567
Species:

Domain
In chain context
In PDB context

Structure of domain e3nvkA3

Domains in the same chain:

Download Pymol

e3nvkA1	A:8-126	Nop N-terminal domain	Nop N-terminal domain	Nop N-terminal domain
e3nvkA2	A:127-257	Nop N-terminal domain	Nop N-terminal domain	Nop N-terminal domain
e3nvkA3	A:258-370	HhH/H2TH	SAM/DNA-glycosylase	Nop C-terminal domain

Domains in the same PDB:

e3nvkA1	A:8-126	Nop N-terminal domain	Nop N-terminal domain	Nop N-terminal domain
e3nvkA2	A:127-257	Nop N-terminal domain	Nop N-terminal domain	Nop N-terminal domain
e3nvkA3	A:258-370	HhH/H2TH	SAM/DNA-glycosylase	Nop C-terminal domain
e3nvkE1	E:4-124	Bacillus chorismate mutase-like	L30e-like	L30e-like
e3nvkF1	F:8-126	Nop N-terminal domain	Nop N-terminal domain	Nop N-terminal domain
e3nvkF2	F:127-257	Nop N-terminal domain	Nop N-terminal domain	Nop N-terminal domain
e3nvkF3	F:258-370	HhH/H2TH	SAM/DNA-glycosylase	Nop C-terminal domain
e3nvkH1	H:4-124	Bacillus chorismate mutase-like	L30e-like	L30e-like
e3nvkI1	I:1-227	Rossmann-like	Rossmann-related	S-adenosyl-L-methionine-dependent methyltransferases
e3nvkJ1	J:1-227	Rossmann-like	Rossmann-related	S-adenosyl-L-methionine-dependent methyltransferases

Structural contacts of domain e3nvkA3 of H-group "SAM/DNA-glycosylase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3nvkI1	A:X,Y,Z->I:x,y,z	Rossmann-related	Interaction Interface Pymol
e3nvkE1	A:X,Y,Z->E:x,y,z	L30e-like	Interaction Interface Pymol