| UID: | 000405668 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1vpsA1 |
| Range: | D:25-289 |
| Ligands: | EDO GOL |
| PDB: | 3nxd |
| PDB Description: | Major capsid protein VP1 |
| UniProt: | P03089 |
| Species: | JC polyomavirus |
Structure of domain e3nxdD1
Domains in the same chain:
| e3nxdD1 | D:25-289 | jelly-roll | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Nucleoplasmin-like/VP (viral coat and capsid proteins) |
Domains in the same PDB:
Structural contacts of domain e3nxdD1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3nxdC1 | D:x,y,z->C:X,Y,Z | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Interaction Interface Pymol |
| e3nxdE1 | D:X,Y,Z->E:x,y,z | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Interaction Interface Pymol |
| e3nxdC1 | D:x,y,z->C:-X+1/2,Y-1/2,-Z+1 | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Interaction Interface Pymol |
| e3nxdE1 | D:-X+1,Y,-Z+1->E:x,y,z | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Interaction Interface Pymol |
| e3nxdB1 | D:x,y,z->B:-X+1/2,Y-1/2,-Z | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Interaction Interface Pymol |
| e3nxdA1 | D:x,y,z->A:X-1/2,Y-1/2,Z | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Interaction Interface Pymol |
| e3nxdA1 | D:x,y,z->A:-X+1/2,Y-1/2,-Z | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Interaction Interface Pymol |
