ECOD: domain e3nzpA4

Domain ID e3nzpA4

A: a/b barrels
X: TIM beta/alpha-barrel
H: TIM barrels
T: TIM barrels
F: Orn_Arg_deC_N

UID:	001812411
Type:	Automatic domain
Parent:	e3nzpB2
Range:	A:52-329
Ligands:	PLP SO4
PDB:	3nzp
PDB Description:	ARGININE DECARBOXYLASE
UniProt:	Q0PAC6
Species:

Domain
In chain context
In PDB context

Structure of domain e3nzpA4

Domains in the same chain:

Download Pymol

e3nzpA2	A:1-51,A:330-343,A:436-554	cradle loop barrel	RIFT-related	Alanine racemase-C
e3nzpA4	A:52-329	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e3nzpA3	A:344-421	Spectrin repeat-like	Helical bundle domain in arginine decarboxylase	Helical bundle domain in arginine decarboxylase
e3nzpA1	A:555-609	Arginine decarboxylase C-terminal helical extension	Arginine decarboxylase C-terminal helical extension	Arginine decarboxylase C-terminal helical extension

Domains in the same PDB:

e3nzpA2	A:1-51,A:330-343,A:436-554	cradle loop barrel	RIFT-related	Alanine racemase-C
e3nzpA4	A:52-329	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e3nzpA3	A:344-421	Spectrin repeat-like	Helical bundle domain in arginine decarboxylase	Helical bundle domain in arginine decarboxylase
e3nzpA1	A:555-609	Arginine decarboxylase C-terminal helical extension	Arginine decarboxylase C-terminal helical extension	Arginine decarboxylase C-terminal helical extension
e3nzpB1	B:1-51,B:330-343,B:436-554	cradle loop barrel	RIFT-related	Alanine racemase-C
e3nzpB2	B:52-329	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e3nzpB3	B:344-421	Spectrin repeat-like	Helical bundle domain in arginine decarboxylase	Helical bundle domain in arginine decarboxylase
e3nzpB4	B:555-611	Arginine decarboxylase C-terminal helical extension	Arginine decarboxylase C-terminal helical extension	Arginine decarboxylase C-terminal helical extension

Structural contacts of domain e3nzpA4 of H-group "TIM barrels":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3nzpB4	A:X,Y,Z->B:x,y,z	Arginine decarboxylase C-terminal helical extension	Interaction Interface Pymol
e3nzpB3	A:X,Y,Z->B:x,y,z	Helical bundle domain in arginine decarboxylase	Interaction Interface Pymol
e3nzpB1	A:X,Y,Z->B:x,y,z	RIFT-related	Interaction Interface Pymol
e3nzpA3	A:x,y,z->A:-X,-X+Y,-Z-2/3	Helical bundle domain in arginine decarboxylase	Interaction Interface Pymol
e3nzpA3	A:-X,-X+Y,-Z-2/3->A:x,y,z	Helical bundle domain in arginine decarboxylase	Interaction Interface Pymol
e3nzpA2	A:-Y+1,X-Y+1,Z+1/3->A:x,y,z	RIFT-related	Interaction Interface Pymol