Domain ID e3ob8B5

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 000427075
Type: Automatic domain
Parent: e1jz8A5
Range: B:332-644
Ligands: GAL MG MN NA
PDB: 3ob8
PDB Description: Beta-galactosidase
UniProt: P00723
Hsap BLAST neighbor: P08236
Species: Kluyveromyces lactis

Structure of domain e3ob8B5

Domains in the same chain:

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e3ob8B7 B:2-205 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3ob8B8 B:206-331 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ob8B5 B:332-644 TIM beta/alpha-barrel TIM barrels TIM barrels
e3ob8B9 B:645-727 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ob8B6 B:728-1025 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3ob8A7 A:2-205 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3ob8A8 A:206-331 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ob8A5 A:332-644 TIM beta/alpha-barrel TIM barrels TIM barrels
e3ob8A9 A:645-727 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ob8A6 A:728-1025 Glycosyl hydrolase domain-like supersandwich supersandwich
e3ob8B7 B:2-205 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3ob8B8 B:206-331 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ob8B5 B:332-644 TIM beta/alpha-barrel TIM barrels TIM barrels
e3ob8B9 B:645-727 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ob8B6 B:728-1025 Glycosyl hydrolase domain-like supersandwich supersandwich
e3ob8C7 C:2-205 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3ob8C8 C:206-331 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ob8C5 C:332-644 TIM beta/alpha-barrel TIM barrels TIM barrels
e3ob8C9 C:645-727 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ob8C6 C:728-1025 Glycosyl hydrolase domain-like supersandwich supersandwich
e3ob8D7 D:2-205 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3ob8D8 D:206-331 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ob8D5 D:332-644 TIM beta/alpha-barrel TIM barrels TIM barrels
e3ob8D9 D:645-727 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ob8D6 D:728-1025 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3ob8B5 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ob8D6 B:X,Y,Z->D:x,y,z supersandwich Interaction Interface Pymol
e3ob8A6 B:x,y,z->A:X,Y,Z supersandwich Interaction Interface Pymol
e3ob8D7 B:X-1/2,-Y-1/2,-Z->D:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e3ob8D8 B:X-1/2,-Y-1/2,-Z->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3ob8A7 B:x,y,z->A:-X,Y-1/2,-Z-1/2 Galactose-binding domain-like Interaction Interface Pymol