Domain ID e3ojyB4

Download files:
  • A: few secondary structure elements
  • X: EGF-like
  • H: EGF-related
  • T: EGF/Laminin
  • F: C8A_B_C6_EGF-like
UID: 000146870
Type: Manual and representative domain
Range: B:448-486
Ligands: BMA
PDB: 3ojy
PDB Description: Complement component C8 beta chain
UniProt: P07358
Hsap BLAST neighbor: P07358
Species: Homo sapiens

Structure of domain e3ojyB4

Domains in the same chain:

Download Pymol

e3ojyB1 B:7-64 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e3ojyB2 B:65-108 EGF-like LDL receptor-like module LDL receptor-like module
e3ojyB3 B:109-447 Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e3ojyB4 B:448-486 EGF-like EGF-related EGF/Laminin
e3ojyB5 B:487-536 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat

Domains in the same PDB:

e3ojyA1 A:2-64 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e3ojyA2 A:65-108 EGF-like LDL receptor-like module LDL receptor-like module
e3ojyA3 A:109-465 Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e3ojyA4 A:466-503 EGF-like EGF-related EGF/Laminin
e3ojyA5 A:504-552 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e3ojyB1 B:7-64 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e3ojyB2 B:65-108 EGF-like LDL receptor-like module LDL receptor-like module
e3ojyB3 B:109-447 Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e3ojyB4 B:448-486 EGF-like EGF-related EGF/Laminin
e3ojyB5 B:487-536 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e3ojyC1 C:13-180 Lipocalins/Streptavidin Lipocalins Lipocalins

Structural contacts of domain e3ojyB4 of H-group "EGF-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ojyA3 B:x,y,z->A:X,Y,Z Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Interaction Interface Pymol