Domain ID e3orbJ1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L13/L15p/L18e/L32e
  • H: Ribosomal protein L13 and L16-A
  • T: Ribosomal protein L13 and L16-A
  • F: Ribosomal_L13
UID: 000402212
Type: Automatic domain
Parent: e4v19N1
Range: J:1-142
Ligands: MG
PDB: 3orb
PDB Description:
Hsap BLAST neighbor: Q9BYD1
Species:

Structure of domain e3orbJ1

Domains in the same chain:

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e3orbJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A

Domains in the same PDB:

e3orb01 0:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3orb21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3orb31 3:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3orb41 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3orbC1 C:1-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3orbC2 C:125-271 SH3 SH3 SH3
e3orbE1 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3orbF1 F:1-177 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3orbG2 G:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3orbG1 G:82-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3orbH2 H:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3orbI2 I:1-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3orbI1 I:72-141 HTH HTH Ribosomal protein L11, C-terminal domain
e3orbJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3orbK1 K:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3orbN1 N:1-120 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3orbO1 O:2-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3orbR1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3orbS1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3orbT1 T:1-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3orbU1 U:1-102 SH3 SH3 SH3
e3orbV1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3orbW1 W:6-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3orbX1 X:1-77 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3orbY1 Y:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3orbZ1 Z:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e3orbJ1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4v19N1 J:X,Y,Z->Q:x,y,z Ribosomal protein L13 and L16-A Interaction Interface Pymol
e4v19N1 J:x,y,z->D:X,Y,Z Ribosomal protein L13 and L16-A Interaction Interface Pymol
e3orbR1 J:X,Y,Z->R:x,y,z Ribosomal protein L21p Interaction Interface Pymol