ECOD: domain e3p05D1

Domain ID e3p05D1

A: alpha bundles
X: Retrovirus capsid protein
H: Retrovirus capsid protein-C
T: Retrovirus capsid protein-C
F: Gag_p24_C

UID:	000409852
Type:	Automatic domain
Parent:	e1a8oA1
Range:	D:148-219
Ligands:	IOD
PDB:	3p05
PDB Description:	HIV-1 CA
UniProt:	P12497
Species:	Human immunodeficiency virus 1

Domain
In chain context
In PDB context

Structure of domain e3p05D1

Domains in the same chain:

Download Pymol

e3p05D2	D:1-147	Retrovirus capsid protein	Retrovirus capsid protein N-terminal domain	Retrovirus capsid protein N-terminal domain
e3p05D1	D:148-219	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C

Domains in the same PDB:

e3p05A2	A:1-147	Retrovirus capsid protein	Retrovirus capsid protein N-terminal domain	Retrovirus capsid protein N-terminal domain
e3p05A1	A:148-219	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C
e3p05B2	B:1-147	Retrovirus capsid protein	Retrovirus capsid protein N-terminal domain	Retrovirus capsid protein N-terminal domain
e3p05B1	B:148-219	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C
e3p05C2	C:1-147	Retrovirus capsid protein	Retrovirus capsid protein N-terminal domain	Retrovirus capsid protein N-terminal domain
e3p05C1	C:148-219	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C
e3p05D2	D:1-147	Retrovirus capsid protein	Retrovirus capsid protein N-terminal domain	Retrovirus capsid protein N-terminal domain
e3p05D1	D:148-219	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C
e3p05E3	E:1-147	Retrovirus capsid protein	Retrovirus capsid protein N-terminal domain	Retrovirus capsid protein N-terminal domain
e3p05E4	E:148-219	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C

Structural contacts of domain e3p05D1 of H-group "Retrovirus capsid protein-C":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3p05E3	D:X,Y,Z->E:x,y,z	Retrovirus capsid protein N-terminal domain	Interaction Interface Pymol
e3p05C2	D:-X,Y-1/2,-Z->C:x,y,z	Retrovirus capsid protein N-terminal domain	Interaction Interface Pymol
e3p05A1	D:x,y,z->A:X,Y,Z-1	Retrovirus capsid protein-C	Interaction Interface Pymol
e3p05B1	D:-X,Y-1/2,-Z->B:x,y,z	Retrovirus capsid protein-C	Interaction Interface Pymol