Domain ID e3p1zD2

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  • A: a/b three-layered sandwiches
  • X: Restriction endonuclease-like
  • H: tRNA-intron endonuclease catalytic domain-like
  • T: tRNA-intron endonuclease catalytic domain-like
  • F: tRNA_int_endo
UID: 000426072
Type: Automatic domain
Parent: e1a79A2
Range: D:90-186
PDB: 3p1z
PDB Description: tRNA-splicing endonuclease
UniProt: Q9YBF1
Hsap BLAST neighbor: Q9BSV6
Species: Aeropyrum pernix

Structure of domain e3p1zD2

Domains in the same chain:

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e3p1zD1 D:3-89 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zD2 D:90-186 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like

Domains in the same PDB:

e3p1zA2 A:3-82 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zA1 A:82-170 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1zB2 B:3-89 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zB1 B:90-186 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1zC1 C:10-82 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zC2 C:82-170 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1zD1 D:3-89 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zD2 D:90-186 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1zE1 E:3-82 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zE2 E:82-170 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1zF1 F:7-89 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zF2 F:90-186 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1zG1 G:10-82 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zG2 G:82-170 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1zH1 H:3-89 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zH2 H:90-186 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1zI1 I:3-82 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zI2 I:82-170 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1zJ1 J:7-89 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zJ2 J:90-186 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1zK1 K:10-82 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zK2 K:82-170 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1zL1 L:3-89 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1zL2 L:90-186 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like

Structural contacts of domain e3p1zD2 of H-group "tRNA-intron endonuclease catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3p1zC2 D:x,y,z->C:X,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e3p1zA1 D:x,y,z->A:X,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e3p1zB2 D:x,y,z->B:-Y,X-Y-1,Z+1/3 tRNA-intron endonuclease N-terminal domain-like Interaction Interface Pymol
e3p1zB1 D:x,y,z->B:X,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e3p1zE1 D:x,y,z->E:X,Y,Z tRNA-intron endonuclease N-terminal domain-like Interaction Interface Pymol