ECOD: domain e3p87D1

Domain ID e3p87D1

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: PCNA_N

UID:	000411748
Type:	Automatic domain
Parent:	e1plqA1
Range:	D:1-124
PDB:	3p87
PDB Description:	PROLIFERATING CELL NUCLEAR ANTIGEN
UniProt:	P12004
Hsap BLAST neighbor:	P12004
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3p87D1

Domains in the same chain:

Download Pymol

e3p87D1	D:1-124	DNA clamp	DNA clamp	DNA clamp
e3p87D2	D:125-256	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e3p87A1	A:1-126	DNA clamp	DNA clamp	DNA clamp
e3p87A2	A:127-256	DNA clamp	DNA clamp	DNA clamp
e3p87B1	B:1-124	DNA clamp	DNA clamp	DNA clamp
e3p87B2	B:125-256	DNA clamp	DNA clamp	DNA clamp
e3p87C1	C:1-124	DNA clamp	DNA clamp	DNA clamp
e3p87C2	C:125-256	DNA clamp	DNA clamp	DNA clamp
e3p87D1	D:1-124	DNA clamp	DNA clamp	DNA clamp
e3p87D2	D:125-256	DNA clamp	DNA clamp	DNA clamp
e3p87E1	E:1-124	DNA clamp	DNA clamp	DNA clamp
e3p87E2	E:125-256	DNA clamp	DNA clamp	DNA clamp
e3p87F1	F:1-124	DNA clamp	DNA clamp	DNA clamp
e3p87F2	F:125-256	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e3p87D1 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3p87F2	D:X,Y,Z->F:x,y,z	DNA clamp	Interaction Interface Pymol
e3p87F1	D:-X-1,Y-1/2,-Z->F:x,y,z	DNA clamp	Interaction Interface Pymol
e3p87E1	D:-X,Y-1/2,-Z->E:x,y,z	DNA clamp	Interaction Interface Pymol
e3p87E2	D:-X,Y-1/2,-Z->E:x,y,z	DNA clamp	Interaction Interface Pymol
e3p87F1	D:X,Y-1,Z->F:x,y,z	DNA clamp	Interaction Interface Pymol
e3p87A2	D:x,y,z->A:X,Y,Z	DNA clamp	Interaction Interface Pymol
e3p87A1	D:x,y,z->A:X,Y,Z	DNA clamp	Interaction Interface Pymol