Domain ID e3pd2A1

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  • A: a/b three-layered sandwiches
  • X: DTD-like
  • H: DTD-like (Pfam 02580)
  • T: DTD-like (Pfam 02580)
  • F: tRNA-Thr_ED
UID: 000141565
Type: Manual and representative domain
Range: A:1-147
Ligands: A3S
PDB: 3pd2
PDB Description: THREONYL-TRNA SYNTHETASE
UniProt: Q9UZ14
Species: Pyrococcus abyssi

Structure of domain e3pd2A1

Structural contacts of domain e3pd2A1 of H-group "DTD-like (Pfam 02580)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pd2B1 A:X,Y,Z->B:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd2B1 A:x,y,z->B:-X+1/2,-Y,Z-1/2 DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd2A1 A:x,y,z->A:X-1,Y,Z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd2A1 A:X-1,Y,Z->A:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd2B1 A:X-1/2,-Y-1/2,-Z->B:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd2B1 A:x,y,z->B:X-1/2,-Y-1/2,-Z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd2A1 A:x,y,z->A:-X+1,Y-1/2,-Z-1/2 DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd2A1 A:-X+1,Y-1/2,-Z-1/2->A:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd2B1 A:X-1/2,-Y+1/2,-Z->B:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd2B1 A:x,y,z->B:-X+3/2,-Y,Z-1/2 DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd2B1 A:x,y,z->B:X-1/2,-Y+1/2,-Z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd2B1 A:X-1,Y,Z->B:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol