Domain ID e3pdoB1

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  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: C1-set
UID: 000141563
Type: Automatic domain
Parent: e1k5nB1
Range: B:94-190
Ligands: FMT GOL
PDB: 3pdo
PDB Description: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-1 BETA CHAIN
UniProt: P04229
Hsap BLAST neighbor: P01911
Species: Homo sapiens

Structure of domain e3pdoB1

Structural contacts of domain e3pdoB1 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pdoA1 B:x,y,z->A:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3pdoA2 B:x,y,z->A:X,Y,Z MHC antigen-recognition domain Interaction Interface Pymol
e3pdoA2 B:-X+1,Y-1/2,-Z+1/2->A:x,y,z MHC antigen-recognition domain Interaction Interface Pymol
e3pdoA1 B:-X+1,Y-1/2,-Z+1/2->A:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3pdoA2 B:-X+3/2,-Y,Z-1/2->A:x,y,z MHC antigen-recognition domain Interaction Interface Pymol