Domain ID e3pefB2

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: NAD(P)-binding Rossmann-fold domains
  • F: NAD_binding_2
UID: 000435137
Type: Automatic domain
Parent: e2pgdA2
Range: B:1-162
Ligands: GOL NAP
PDB: 3pef
PDB Description: 6-phosphogluconate dehydrogenase, NAD-binding
UniProt: Q39R98
Hsap BLAST neighbor: Q49A26
Species: Geobacter metallireducens

Structure of domain e3pefB2

Domains in the same chain:

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e3pefB2 B:1-162 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3pefB1 B:163-287 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like

Domains in the same PDB:

e3pefA2 A:1-162 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3pefA1 A:163-287 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e3pefB2 B:1-162 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3pefB1 B:163-287 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e3pefC2 C:1-162 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3pefC1 C:163-287 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e3pefD2 D:1-162 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3pefD3 D:163-286 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e3pefE2 E:1-162 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3pefE1 E:163-286 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e3pefF2 F:2-162 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3pefF3 F:163-286 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e3pefG2 G:1-162 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3pefG1 G:163-287 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e3pefH2 H:2-162 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3pefH3 H:163-287 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like

Structural contacts of domain e3pefB2 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pefD3 B:X,Y,Z->D:x,y,z 6-phosphogluconate dehydrogenase C-terminal domain-like Interaction Interface Pymol
e3pefH3 B:X,Y,Z->H:x,y,z 6-phosphogluconate dehydrogenase C-terminal domain-like Interaction Interface Pymol
e3pefG1 B:X,Y,Z->G:x,y,z 6-phosphogluconate dehydrogenase C-terminal domain-like Interaction Interface Pymol
e3pefG2 B:X,Y,Z->G:x,y,z Rossmann-related Interaction Interface Pymol
e3pefF3 B:X,Y,Z->F:x,y,z 6-phosphogluconate dehydrogenase C-terminal domain-like Interaction Interface Pymol