ECOD: domain e3pgjD1

Domain ID e3pgjD1

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: NAD(P)-binding Rossmann-fold domains
F: Shikimate_DH,SDH_C

UID:	000406385
Type:	Automatic domain
Parent:	e1nvtA1
Range:	D:106-275
Ligands:	SKM
PDB:	3pgj
PDB Description:	Shikimate dehydrogenase
UniProt:	Q9KVT3
Species:

Domain
In chain context
In PDB context

Structure of domain e3pgjD1

Domains in the same chain:

Download Pymol

e3pgjD2	D:5-105	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e3pgjD1	D:106-275	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains

Domains in the same PDB:

e3pgjA2	A:5-105	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e3pgjA1	A:106-276	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e3pgjB2	B:5-105	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e3pgjB1	B:106-275	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e3pgjC2	C:5-105	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e3pgjC1	C:106-275	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e3pgjD2	D:5-105	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e3pgjD1	D:106-275	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains

Structural contacts of domain e3pgjD1 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3pgjB1	D:x,y,z->B:-X,Y-1/2,-Z+1	Rossmann-related	Interaction Interface Pymol
e3pgjA1	D:x,y,z->A:-X,Y-1/2,-Z+1	Rossmann-related	Interaction Interface Pymol
e3pgjB1	D:X,Y,Z-1->B:x,y,z	Rossmann-related	Interaction Interface Pymol
e3pgjC2	D:X,Y,Z-1->C:x,y,z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e3pgjA1	D:X,Y,Z-1->A:x,y,z	Rossmann-related	Interaction Interface Pymol