Domain ID e3pieB4

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  • A: beta barrels
  • X: SH3
  • H: SH3
  • T: SH3
  • F: XRN1_D1
UID: 001759252
Type: Automatic domain
Parent: e3pieA4
Range: B:721-914
PDB: 3pie
PDB Description: 5'->3' EXORIBONUCLEASE (Xrn1)
UniProt: Q6CJ09
Hsap BLAST neighbor: Q8IZH2
Species: Kluyveromyces lactis

Structure of domain e3pieB4

Domains in the same chain:

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e3pieB3 B:3-249 HAD domain-like HAD domain-related PIN domain-like
e3pieB7 B:250-380,B:504-673 Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases
e3pieB5 B:381-462 R3H domain-like R3H-like domain in 5'->3' exoribonucleases R3H-like domain in 5'->3' exoribonucleases
e3pieB8 B:674-720 C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases
e3pieB4 B:721-914 SH3 SH3 SH3
e3pieB6 B:915-1155 SH3 SH3 SH3
e3pieB2 B:1156-1240 SH3 SH3 SH3

Domains in the same PDB:

e3pieA1 A:3-249 HAD domain-like HAD domain-related PIN domain-like
e3pieA2 A:250-380,A:504-673 Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases
e3pieA3 A:381-462 R3H domain-like R3H-like domain in 5'->3' exoribonucleases R3H-like domain in 5'->3' exoribonucleases
e3pieA7 A:674-720 C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases
e3pieA4 A:721-914 SH3 SH3 SH3
e3pieA5 A:915-1155 SH3 SH3 SH3
e3pieA6 A:1156-1240 SH3 SH3 SH3
e3pieB3 B:3-249 HAD domain-like HAD domain-related PIN domain-like
e3pieB7 B:250-380,B:504-673 Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases
e3pieB5 B:381-462 R3H domain-like R3H-like domain in 5'->3' exoribonucleases R3H-like domain in 5'->3' exoribonucleases
e3pieB8 B:674-720 C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases
e3pieB4 B:721-914 SH3 SH3 SH3
e3pieB6 B:915-1155 SH3 SH3 SH3
e3pieB2 B:1156-1240 SH3 SH3 SH3
e3pieC3 C:3-249 HAD domain-like HAD domain-related PIN domain-like
e3pieC6 C:250-380,C:504-673 Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases
e3pieC1 C:381-462 R3H domain-like R3H-like domain in 5'->3' exoribonucleases R3H-like domain in 5'->3' exoribonucleases
e3pieC7 C:674-720 C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases
e3pieC2 C:721-914 SH3 SH3 SH3
e3pieC5 C:915-1155 SH3 SH3 SH3
e3pieC4 C:1156-1240 SH3 SH3 SH3
e3pieD1 D:3-249 HAD domain-like HAD domain-related PIN domain-like
e3pieD7 D:250-380,D:504-673 Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases
e3pieD6 D:381-462 R3H domain-like R3H-like domain in 5'->3' exoribonucleases R3H-like domain in 5'->3' exoribonucleases
e3pieD8 D:674-720 C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases
e3pieD3 D:721-914 SH3 SH3 SH3
e3pieD4 D:915-981,D:1106-1155 SH3 SH3 SH3
e3pieD5 D:1156-1240 SH3 SH3 SH3

Structural contacts of domain e3pieB4 of H-group "SH3":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pieA3 B:X,Y,Z-1->A:x,y,z R3H-like domain in 5'->3' exoribonucleases Interaction Interface Pymol
e3pieC2 B:X,Y,Z-1->C:x,y,z SH3 Interaction Interface Pymol