ECOD: domain e3pl6A1

Domain ID e3pl6A1

A: a+b two layers
X: MHC antigen-recognition domain
H: MHC antigen-recognition domain
T: MHC antigen-recognition domain
F: MHC_II_alpha

UID:	001144748
Type:	Manual and representative domain
Range:	A:-1-82
PDB:	3pl6
PDB Description:	MHC class II HLA-DQ-alpha chain
In assembly with:	e3pl6B1
UniProt:	A0A173ADG5
Hsap BLAST neighbor:	P01906
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e3pl6A1	A:-1-82	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e3pl6A2	A:83-180	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e3pl6A1	A:-1-82	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e3pl6A2	A:83-180	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pl6B1	B:3-92	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e3pl6B2	B:93-191	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pl6C1	C:2-112	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pl6C2	C:113-192	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pl6D3	D:28-140	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pl6D1	D:141-267	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3pl6A1 of H-group "MHC antigen-recognition domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3pl6B1	A:X,Y,Z->B:x,y,z	MHC antigen-recognition domain	Interaction Interface Pymol
e3pl6B2	A:X,Y,Z->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e3pl6D3	A:X,Y,Z->D:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e3pl6C2	A:-X+1,Y-1/2,-Z-1/2->C:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e3pl6C1	A:X,Y,Z->C:x,y,z	Immunoglobulin-related	Interaction Interface Pymol