ECOD: domain e3psiA6

Domain ID e3psiA6

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: HHH_9

UID:	001312413
Type:	Manual and representative domain
Range:	A:1002-1113
PDB:	3psi
PDB Description:	TRANSCRIPTION ELONGATION FACTOR SPT6
UniProt:	P23615
Hsap BLAST neighbor:	Q7KZ85
Species:	Saccharomyces cerevisiae

Domain
In chain context
In PDB context

Structure of domain e3psiA6

Domains in the same chain:

Download Pymol

e3psiA27	A:312-425	HTH	Tex N-terminal domain	Tex N-terminal domain
e3psiA28	A:426-481	immunoglobulin/albumin-binding domain-like	Tex bundle domain-like	Tex bundle domain-like
e3psiA24	A:482-489,A:509-736	Tex N-terminal region-like	Tex N-terminal region-like	Tex N-terminal region-like
e3psiA25	A:737-906	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3psiA26	A:907-1001	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3psiA6	A:1002-1113	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3psiA7	A:1114-1210	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Domains in the same PDB:

e3psiA27	A:312-425	HTH	Tex N-terminal domain	Tex N-terminal domain
e3psiA28	A:426-481	immunoglobulin/albumin-binding domain-like	Tex bundle domain-like	Tex bundle domain-like
e3psiA24	A:482-489,A:509-736	Tex N-terminal region-like	Tex N-terminal region-like	Tex N-terminal region-like
e3psiA25	A:737-906	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3psiA26	A:907-1001	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3psiA6	A:1002-1113	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3psiA7	A:1114-1210	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Structural contacts of domain e3psiA6 of H-group "SAM/DNA-glycosylase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3psiA24	A:x,y,z->A:-X-1,-X+Y-1,-Z+1/3	Tex N-terminal region-like	Interaction Interface Pymol
e3psiA25	A:-X-1,-X+Y-1,-Z+1/3->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol