ECOD: domain e3ptfB1

Domain ID e3ptfB1

A: a+b two layers
X: UBC-like
H: UBC-like
T: UBC-like
F: UQ_con

UID:	000418909
Type:	Automatic domain
Parent:	e1jatB1
Range:	B:-4-147
PDB:	3ptf
PDB Description:	UBIQUITIN-CONJUGATING ENZYME E2 D1
UniProt:	P51668
Hsap BLAST neighbor:	P51668
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3ptfB1

Domains in the same chain:

Download Pymol

e3ptfB1	B:-4-147	UBC-like	UBC-like	UBC-like

Domains in the same PDB:

e3ptfA2	A:2-147	UBC-like	UBC-like	UBC-like
e3ptfB1	B:-4-147	UBC-like	UBC-like	UBC-like
e3ptfC1	C:1-73	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3ptfD1	D:0-73	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Structural contacts of domain e3ptfB1 of H-group "UBC-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3ptfD1	B:X,Y,Z->D:x,y,z	Ubiquitin-related	Interaction Interface Pymol
e3ptfA2	B:-X+1,Y-1/2,-Z+1/2->A:x,y,z	UBC-like	Interaction Interface Pymol
e3ptfC1	B:X,Y,Z->C:x,y,z	Ubiquitin-related	Interaction Interface Pymol
e3ptfA2	B:-X,Y-1/2,-Z+1/2->A:x,y,z	UBC-like	Interaction Interface Pymol
e3ptfC1	B:X-1,Y,Z->C:x,y,z	Ubiquitin-related	Interaction Interface Pymol
e3ptfB1	B:x,y,z->B:X-1,Y,Z	UBC-like	Interaction Interface Pymol
e3ptfB1	B:X-1,Y,Z->B:x,y,z	UBC-like	Interaction Interface Pymol
e3ptfA2	B:x,y,z->A:X,Y,Z	UBC-like	Interaction Interface Pymol
e3ptfA2	B:X-1/2,-Y+1/2,-Z->A:x,y,z	UBC-like	Interaction Interface Pymol
e3ptfD1	B:X-1/2,-Y+3/2,-Z->D:x,y,z	Ubiquitin-related	Interaction Interface Pymol
e3ptfD1	B:X-1,Y,Z->D:x,y,z	Ubiquitin-related	Interaction Interface Pymol
e3ptfB1	B:x,y,z->B:X-1/2,-Y+1/2,-Z	UBC-like	Interaction Interface Pymol
e3ptfB1	B:X-1/2,-Y+1/2,-Z->B:x,y,z	UBC-like	Interaction Interface Pymol