Domain ID e3pvmD1

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  • A: beta barrels
  • X: OB-fold
  • H: TIMP-like
  • T: TIMP-like
  • F: NTR
UID: 001138726
Type: Automatic domain
Parent: e1uapA1
Range: D:1473-1642
PDB: 3pvm
PDB Description: COBRA VENOM FACTOR
UniProt: Q91132
Hsap BLAST neighbor: P01024
Species: Naja kaouthia

Structure of domain e3pvmD1

Domains in the same chain:

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e3pvmD7 D:23-124 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD5 D:125-218 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD8 D:219-341 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD9 D:342-436 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD6 D:437-543 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD4 D:544-648,D:735-811 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD3 D:812-918 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD2 D:919-969,D:1270-1333 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3pvmD10 D:1334-1472 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e3pvmD1 D:1473-1642 OB-fold TIMP-like TIMP-like

Domains in the same PDB:

e3pvmA24 A:20-122 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmA20 A:122-222 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmA22 A:223-349 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmA13 A:349-459 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmA14 A:460-565 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmA17 A:566-679,A:758-821 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmA23 A:679-757 Anaphylotoxins (complement system) Anaphylotoxins (complement system) Anaphylotoxins (complement system)
e3pvmA16 A:822-932 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmA15 A:933-985,A:1309-1369 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3pvmA21 A:986-1308 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e3pvmA19 A:1370-1532 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e3pvmA18 A:1530-1676 OB-fold TIMP-like TIMP-like
e3pvmB1 B:23-124 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmB2 B:125-218 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmB3 B:219-341 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmB4 B:342-436 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmB5 B:437-543 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmB6 B:544-648,B:735-811 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmB7 B:812-918 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmB8 B:919-969,B:1270-1333 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3pvmB9 B:1339-1481 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e3pvmB10 B:1482-1642 OB-fold TIMP-like TIMP-like
e3pvmC18 C:20-122 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmC15 C:122-222 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmC13 C:223-349 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmC24 C:349-459 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmC19 C:460-565 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmC23 C:566-679,C:758-821 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmC14 C:679-757 Anaphylotoxins (complement system) Anaphylotoxins (complement system) Anaphylotoxins (complement system)
e3pvmC17 C:822-932 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmC20 C:933-985,C:1309-1369 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3pvmC22 C:986-1308 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e3pvmC16 C:1370-1532 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e3pvmC21 C:1530-1676 OB-fold TIMP-like TIMP-like
e3pvmD7 D:23-124 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD5 D:125-218 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD8 D:219-341 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD9 D:342-436 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD6 D:437-543 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD4 D:544-648,D:735-811 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD3 D:812-918 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3pvmD2 D:919-969,D:1270-1333 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3pvmD10 D:1334-1472 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e3pvmD1 D:1473-1642 OB-fold TIMP-like TIMP-like

Structural contacts of domain e3pvmD1 of H-group "TIMP-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pvmD3 D:x,y,z->D:-X,Y,-Z-1/2 Immunoglobulin-related Interaction Interface Pymol
e3pvmD2 D:x,y,z->D:-X,Y,-Z-1/2 Spermadhesin, CUB domain Interaction Interface Pymol
e3pvmD1 D:x,y,z->D:-X,Y,-Z-1/2 TIMP-like Interaction Interface Pymol
e3pvmD4 D:x,y,z->D:-X,Y,-Z-1/2 Immunoglobulin-related Interaction Interface Pymol
e3pvmD5 D:x,y,z->D:-X,Y,-Z-1/2 Immunoglobulin-related Interaction Interface Pymol
e3pvmD1 D:-X,Y,-Z-1/2->D:x,y,z TIMP-like Interaction Interface Pymol
e3pvmD5 D:-X,Y,-Z-1/2->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3pvmD4 D:-X,Y,-Z-1/2->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3pvmD2 D:-X,Y,-Z-1/2->D:x,y,z Spermadhesin, CUB domain Interaction Interface Pymol
e3pvmD3 D:-X,Y,-Z-1/2->D:x,y,z Immunoglobulin-related Interaction Interface Pymol