Domain ID e3px4D2

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_A
UID: 000431607
Type: Automatic domain
Parent: e2hhvA2
Range: D:469-642
Ligands: DCT
PDB: 3px4
PDB Description: DNA polymerase I
UniProt: Q5KWC1
Hsap BLAST neighbor: Q7Z5Q5
Species: Geobacillus kaustophilus

Structure of domain e3px4D2

Domains in the same chain:

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e3px4D4 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3px4D2 D:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3px4D3 D:643-667,D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3px4D1 D:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e3px4A2 A:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3px4A4 A:465-649 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3px4A3 A:650-679,A:710-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e3px4A5 A:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3px4D4 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3px4D2 D:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3px4D3 D:643-667,D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3px4D1 D:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e3px4D2 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2hhvA2 D:x,y,z->A:-X+5/2,-Y,Z-1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3px4A3 D:x,y,z->A:-X+5/2,-Y,Z-1/2 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e3px4A3 D:x,y,z->A:-X+5/2,-Y-1,Z-1/2 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e3px4A2 D:x,y,z->A:-X+5/2,-Y-1,Z-1/2 Ribonuclease H-like Interaction Interface Pymol
e3px4A3 D:x,y,z->A:X,Y,Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e3px4A2 D:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e3px4A2 D:X-1/2,-Y-1/2,-Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3px4A2 D:x,y,z->A:X-1/2,-Y-1/2,-Z Ribonuclease H-like Interaction Interface Pymol
e3px4A3 D:x,y,z->A:X-1/2,-Y-1/2,-Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e3px4D4 D:-X+3,Y-1/2,-Z-1/2->D:x,y,z Ribonuclease H-like Interaction Interface Pymol