ECOD: domain e3q8sB1

Domain ID e3q8sB1

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: IMS_HHH_1

UID:	000413557
Type:	Automatic domain
Parent:	e1t3nA1
Range:	B:234-299
Ligands:	MG
PDB:	3q8s
PDB Description:	DNA polymerase iota
UniProt:	Q9UNA4
Hsap BLAST neighbor:	Q9UNA4
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3q8sB1

Domains in the same chain:

Download Pymol

e3q8sB3	B:27-47,B:98-233	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3q8sB4	B:48-97	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like
e3q8sB1	B:234-299	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3q8sB2	B:300-414	Reverse ferredoxin	Lesion bypass DNA polymerase (Y-family), little finger domain	Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e3q8sB3	B:27-47,B:98-233	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3q8sB4	B:48-97	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like
e3q8sB1	B:234-299	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3q8sB2	B:300-414	Reverse ferredoxin	Lesion bypass DNA polymerase (Y-family), little finger domain	Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e3q8sB1 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3q8sB1	B:x,y,z->B:X,X-Y-1,-Z-1/6	SAM/DNA-glycosylase	Interaction Interface Pymol
e3q8sB1	B:X,X-Y-1,-Z-1/6->B:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol