ECOD: domain e3qnoA8

Domain ID e3qnoA8

A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: DNA_pol_B

UID:	001256823
Type:	Automatic domain
Parent:	e1tgoA4
Range:	A:376-468,A:575-732
Ligands:	ATP CA
PDB:	3qno
PDB Description:	DNA Polymerase
UniProt:	Q38087
Species:	Enterobacteria phage RB69

Domains in the same chain:

Download Pymol

e3qnoA5	A:1-375	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3qnoA8	A:376-468,A:575-732	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3qnoA7	A:469-574	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3qnoA6	A:733-901	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e3qnoA5	A:1-375	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3qnoA8	A:376-468,A:575-732	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3qnoA7	A:469-574	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3qnoA6	A:733-901	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e3qnoA8 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3qnoA5	A:-X,Y-1/2,-Z-1/2->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e3qnoA7	A:x,y,z->A:X-1/2,-Y-1/2,-Z-1	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3qnoA6	A:X-1/2,-Y-1/2,-Z-1->A:x,y,z	"thumb" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3qnoA5	A:x,y,z->A:-X+1/2,-Y,Z-1/2	Ribonuclease H-like	Interaction Interface Pymol
e3qnoA6	A:x,y,z->A:-X-1/2,-Y,Z-1/2	"thumb" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol