| UID: | 000419060 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1oltA2 |
| Range: | B:78-374 |
| Ligands: | MRD SF4 |
| PDB: | 3rf9 |
| PDB Description: | Ribosomal RNA large subunit methyltransferase N |
| UniProt: | P36979 |
| Species: |
Structure of domain e3rf9B1
Domains in the same chain:
| e3rf9B2 | B:14-77 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e3rf9B1 | B:78-374 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
Domains in the same PDB:
Structural contacts of domain e3rf9B1 of H-group "TIM barrels":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3rf9B2 | B:x,y,z->B:-X+1/2,Y-1/2,-Z+1/2 | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e3rf9B1 | B:x,y,z->B:-X+1/2,Y-1/2,-Z+1/2 | TIM barrels | Interaction Interface Pymol |
| e3rf9B1 | B:-X+1/2,Y-1/2,-Z+1/2->B:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3rf9B1 | B:x,y,z->B:X-1/2,Y+1/2,Z | TIM barrels | Interaction Interface Pymol |
| e3rf9B2 | B:X-1/2,Y+1/2,Z->B:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e3rf9B1 | B:X-1/2,Y+1/2,Z->B:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3rf9A2 | B:X-1/2,Y-1/2,Z->A:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3rf9A2 | B:X-1,Y,Z->A:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3rf9A2 | B:x,y,z->A:X,Y,Z | TIM barrels | Interaction Interface Pymol |
| e3rf9A2 | B:X-1/2,Y+1/2,Z->A:x,y,z | TIM barrels | Interaction Interface Pymol |
