Domain ID e3rfaB2

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Radical_SAM
UID: 000419063
Type: Automatic domain
Parent: e1oltA2
Range: B:78-375
Ligands: SAM SF4
PDB: 3rfa
PDB Description: RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE N
UniProt: P36979
Species:

Structure of domain e3rfaB2

Structural contacts of domain e3rfaB2 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3rfaA3 B:X-1,Y,Z->A:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol
e3rfaA4 B:X-1,Y,Z->A:x,y,z TIM barrels Interaction Interface Pymol
e3rfaB1 B:x,y,z->B:X,Y-1,Z SAM/DNA-glycosylase Interaction Interface Pymol
e3rfaB2 B:x,y,z->B:X,Y-1,Z TIM barrels Interaction Interface Pymol
e3rfaB2 B:X,Y-1,Z->B:x,y,z TIM barrels Interaction Interface Pymol
e3rfaB2 B:x,y,z->B:-X,Y-1/2,-Z-1/2 TIM barrels Interaction Interface Pymol
e3rfaB2 B:-X,Y-1/2,-Z-1/2->B:x,y,z TIM barrels Interaction Interface Pymol
e3rfaB2 B:x,y,z->B:-X-1,Y-1/2,-Z-1/2 TIM barrels Interaction Interface Pymol
e3rfaB2 B:-X-1,Y-1/2,-Z-1/2->B:x,y,z TIM barrels Interaction Interface Pymol
e3rfaA4 B:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol