Domain ID e3rnmB2

Download files:
  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: FAD/NAD(P)-binding domain
  • F: Pyr_redox_2
UID: 000418554
Type: Automatic domain
Parent: e4gavB2
Range: B:4-155,B:278-350
Ligands: BME FAD
DrugDomain: DB03147
PDB: 3rnm
PDB Description: DIHYDROLIPOYL DEHYDROGENASE, MITOCHONDRIAL
UniProt: P09622
Hsap BLAST neighbor: P09622
Species: Homo sapiens

Structure of domain e3rnmB2

Domains in the same chain:

Download Pymol

e3rnmB2 B:4-155,B:278-350 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3rnmB3 B:156-277 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3rnmB1 B:351-474 FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain

Domains in the same PDB:

e3rnmA2 A:3-155,A:278-350 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3rnmA3 A:156-277 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3rnmA1 A:351-474 FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain
e3rnmB2 B:4-155,B:278-350 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3rnmB3 B:156-277 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3rnmB1 B:351-474 FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain
e3rnmC2 C:3-155,C:278-350 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3rnmC3 C:156-277 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3rnmC1 C:351-474 FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain
e3rnmD2 D:4-155,D:278-350 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3rnmD3 D:156-277 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3rnmD1 D:351-474 FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain
e3rnmE1 E:110-160 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
e3rnmF1 F:111-153 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex

Structural contacts of domain e3rnmB2 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3rnmA1 B:x,y,z->A:X,Y,Z FAD/NAD-linked reduatases, dimerisation (C-terminal) domain Interaction Interface Pymol
e3rnmA2 B:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e3rnmE1 B:X,Y,Z->E:x,y,z Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Interaction Interface Pymol
e3rnmF1 B:X-1,Y-1,Z->F:x,y,z Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Interaction Interface Pymol
e3rnmC3 B:X,Y,Z->C:x,y,z Rossmann-related Interaction Interface Pymol