ECOD: domain e3rrmA2

Domain ID e3rrmA2

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: Helicase_C

UID:	000419751
Type:	Automatic domain
Parent:	e1hv8A2
Range:	A:293-482
Ligands:	ADP IHP
PDB:	3rrm
PDB Description:	ATP-dependent RNA helicase DBP5
UniProt:	P20449
Hsap BLAST neighbor:	Q9UMR2
Species:	Saccharomyces cerevisiae

Domain
In chain context
In PDB context

Structure of domain e3rrmA2

Domains in the same chain:

Download Pymol

e3rrmA1	A:98-292	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3rrmA2	A:293-482	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e3rrmA1	A:98-292	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3rrmA2	A:293-482	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3rrmB1	B:244-538	Repetitive alpha hairpins	ARM repeat	ARM repeat
e3rrmC1	C:0-381	beta-propeller-like	beta-propeller	7-bladed

Structural contacts of domain e3rrmA2 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3rrmB1	A:X,Y,Z->B:x,y,z	ARM repeat	Interaction Interface Pymol
e3rrmC1	A:x,y,z->C:-X+3/2,Y-1/2,-Z+1	beta-propeller	Interaction Interface Pymol
e3rrmC1	A:-X+3/2,Y-1/2,-Z+1->C:x,y,z	beta-propeller	Interaction Interface Pymol
e3rrmB1	A:-X+1,Y,-Z->B:x,y,z	ARM repeat	Interaction Interface Pymol
e3rrmA1	A:-X+3/2,Y-1/2,-Z+1->A:x,y,z	P-loop domains-related	Interaction Interface Pymol