ECOD: domain e3rtrH1

Domain ID e3rtrH1

A: few secondary structure elements
X: RING/U-box-like
H: RING/U-box-like
T: RING/U-box
F: zf-rbx1

UID:	000424627
Type:	Automatic domain
Parent:	e3dplR1
Range:	H:20-104
Ligands:	ZN
PDB:	3rtr
PDB Description:	E3 UBIQUITIN-PROTEIN LIGASE RBX1
UniProt:	P62877
Hsap BLAST neighbor:	P62877
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3rtrH1

Domains in the same chain:

Download Pymol

e3rtrH1	H:20-104	RING/U-box-like	RING/U-box-like	RING/U-box

Domains in the same PDB:

e3rtrA4	A:418-505	Repetitive alpha hairpins	ARM repeat	ARM repeat
e3rtrA1	A:506-603	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins
e3rtrA3	A:603-685	HTH	HTH	winged
e3rtrA2	A:686-776	HTH	HTH	winged
e3rtrB1	B:21-106	RING/U-box-like	RING/U-box-like	RING/U-box
e3rtrC3	C:419-505	Repetitive alpha hairpins	ARM repeat	ARM repeat
e3rtrC1	C:506-603	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins
e3rtrC4	C:604-686	HTH	HTH	winged
e3rtrC2	C:687-776	HTH	HTH	winged
e3rtrD1	D:24-106	RING/U-box-like	RING/U-box-like	RING/U-box
e3rtrE7	E:418-505	Repetitive alpha hairpins	ARM repeat	ARM repeat
e3rtrE5	E:506-603	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins
e3rtrE8	E:604-686	HTH	HTH	winged
e3rtrE6	E:687-776	HTH	HTH	winged
e3rtrF1	F:21-106	RING/U-box-like	RING/U-box-like	RING/U-box
e3rtrG7	G:417-505	Repetitive alpha hairpins	ARM repeat	ARM repeat
e3rtrG5	G:506-603	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins
e3rtrG8	G:604-686	HTH	HTH	winged
e3rtrG6	G:687-776	HTH	HTH	winged
e3rtrH1	H:20-104	RING/U-box-like	RING/U-box-like	RING/U-box

Structural contacts of domain e3rtrH1 of H-group "RING/U-box-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3rtrG7	H:x,y,z->G:X,Y,Z	ARM repeat	Interaction Interface Pymol
e3rtrG6	H:x,y,z->G:X,Y,Z	HTH	Interaction Interface Pymol
e3rtrG5	H:x,y,z->G:X,Y,Z	a+b domain in cullin-like proteins	Interaction Interface Pymol
e3rtrG8	H:x,y,z->G:X,Y,Z	HTH	Interaction Interface Pymol
e3rtrF1	H:x,y,z->F:X,Y,Z	RING/U-box-like	Interaction Interface Pymol
e3rtrE6	H:x,y,z->E:X,Y,Z	HTH	Interaction Interface Pymol
e3rtrE7	H:x,y,z->E:X,Y,Z	ARM repeat	Interaction Interface Pymol
e3rtrE5	H:x,y,z->E:X,Y,Z	a+b domain in cullin-like proteins	Interaction Interface Pymol
e3rtrG8	H:X-1/2,-Y-1/2,-Z->G:x,y,z	HTH	Interaction Interface Pymol