ECOD: domain e3s9mD1

Domain ID e3s9mD1

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: Transferrin

UID:	001525617
Type:	Automatic domain
Parent:	e1ryoA3
Range:	D:94-247
Ligands:	CO3 FE
DrugDomain:	DB13949
PDB:	3s9m
PDB Description:	SEROTRANSFERRIN
UniProt:	P02787
Hsap BLAST neighbor:	P02787
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e3s9mD3	D:4-96,D:248-331	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3s9mD1	D:94-247	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3s9mD2	D:332-425,D:583-677	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e3s9mA2	A:121-189,A:383-608	Phosphorylase/hydrolase-like	Zn-dependent exopeptidases	Zn-dependent exopeptidases
e3s9mA3	A:190-382	The "swivelling" beta/beta/alpha domains	The "swivelling" beta/beta/alpha domain	The "swivelling" beta/beta/alpha domain
e3s9mA1	A:609-758	N-cbl like	Transferrin receptor ectodomain, C-terminal domain	Transferrin receptor ectodomain, C-terminal domain
e3s9mB2	B:121-189,B:383-608	Phosphorylase/hydrolase-like	Zn-dependent exopeptidases	Zn-dependent exopeptidases
e3s9mB3	B:190-382	The "swivelling" beta/beta/alpha domains	The "swivelling" beta/beta/alpha domain	The "swivelling" beta/beta/alpha domain
e3s9mB1	B:609-759	N-cbl like	Transferrin receptor ectodomain, C-terminal domain	Transferrin receptor ectodomain, C-terminal domain
e3s9mC3	C:4-96,C:248-331	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3s9mC1	C:94-247	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3s9mC2	C:332-425,C:583-677	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3s9mD3	D:4-96,D:248-331	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3s9mD1	D:94-247	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3s9mD2	D:332-425,D:583-677	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e3s9mD1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3s9mB2	D:x,y,z->B:X,Y,Z	Zn-dependent exopeptidases	Interaction Interface Pymol