Domain ID e3spaA1

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  • A: alpha arrays
  • X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • F: RNA_pol
UID: 001761976
Type: Automatic domain
Parent: e1mswD1
Range: A:939-1085
Ligands: SO4
PDB: 3spa
PDB Description: DNA-directed RNA polymerase, mitochondrial
UniProt: O00411
Hsap BLAST neighbor: O00411
Species: Homo sapiens

Structure of domain e3spaA1

Domains in the same chain:

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e3spaA6 A:218-405 Repetitive alpha hairpins ARM repeat ARM repeat
e3spaA7 A:397-643 HTH HTH HTH in T7 RNA polymerase
e3spaA5 A:644-735,A:770-829 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3spaA2 A:830-938 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e3spaA1 A:939-1085 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e3spaA4 A:1109-1230 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like

Domains in the same PDB:

e3spaA6 A:218-405 Repetitive alpha hairpins ARM repeat ARM repeat
e3spaA7 A:397-643 HTH HTH HTH in T7 RNA polymerase
e3spaA5 A:644-735,A:770-829 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3spaA2 A:830-938 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e3spaA1 A:939-1085 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e3spaA4 A:1109-1230 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like

Structural contacts of domain e3spaA1 of H-group "helical bundle in Bacillus stearothermophilus-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3spaA2 A:-Y+1/2,X,Z-1/4->A:x,y,z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e3spaA2 A:-Y+1/2,X,Z-1/4->A:x,y,z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e3spaA2 A:-Y+1/2,X,Z-1/4->A:x,y,z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e3spaA4 A:X,Y,Z-1->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol