ECOD: domain e3thyA4

Domain ID e3thyA4

A: mixed a+b and a/b
X: Ribonuclease H-like
H: Ribonuclease H-like
T: Ribonuclease H-like
F: MutS_II

UID:	001777478
Type:	Automatic domain
Parent:	e1ewqA4
Range:	A:140-316
PDB:	3thy
PDB Description:	DNA mismatch repair protein Msh2
UniProt:	P43246
Hsap BLAST neighbor:	P43246
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3thyA4

Domains in the same chain:

Download Pymol

e3thyA3	A:13-139	Homing endonucleases-like	DNA repair protein MutS, domain I	DNA repair protein MutS, domain I
e3thyA4	A:140-316	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3thyA2	A:322-615	Four-helical up-and-down bundle	DNA repair protein MutS, domain III	DNA repair protein MutS, domain III
e3thyA1	A:616-854	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e3thyA3	A:13-139	Homing endonucleases-like	DNA repair protein MutS, domain I	DNA repair protein MutS, domain I
e3thyA4	A:140-316	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3thyA2	A:322-615	Four-helical up-and-down bundle	DNA repair protein MutS, domain III	DNA repair protein MutS, domain III
e3thyA1	A:616-854	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3thyB2	B:217-329	Homing endonucleases-like	DNA repair protein MutS, domain I	DNA repair protein MutS, domain I
e3thyB3	B:328-511	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3thyB4	B:512-819	Four-helical up-and-down bundle	DNA repair protein MutS, domain III	DNA repair protein MutS, domain III
e3thyB1	B:820-1120	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e3thyA4 of H-group "Ribonuclease H-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3thyB1	A:X,Y,Z->B:x,y,z	P-loop domains-related	Interaction Interface Pymol
e3thyB1	A:x,y,z->B:X,Y-1,Z	P-loop domains-related	Interaction Interface Pymol
e3thyB4	A:x,y,z->B:X,Y-1,Z	DNA repair protein MutS, domain III	Interaction Interface Pymol
e3thyB4	A:X-1,Y,Z+1->B:x,y,z	DNA repair protein MutS, domain III	Interaction Interface Pymol
e3thyB3	A:X-1,Y+1,Z->B:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e3thyA2	A:X-1,Y,Z->A:x,y,z	DNA repair protein MutS, domain III	Interaction Interface Pymol