ECOD: domain e3ti0D4

Domain ID e3ti0D4

A: mixed a+b and a/b
X: Ribonuclease H-like
H: Ribonuclease H-like
T: Ribonuclease H-like
F: DNA_polI_exo1

UID:	000431747
Type:	Automatic domain
Parent:	e2hhvA4
Range:	D:298-468
Ligands:	SO4
PDB:	3ti0
PDB Description:	DNA POLYMERASE I
UniProt:	C9RTX7
Species:

Domains in the same chain:

Download Pymol

e3ti0D4	D:298-468	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3ti0D2	D:469-642	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3ti0D3	D:643-667,D:792-876	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3ti0D1	D:668-791	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e3ti0A4	A:298-468	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3ti0A2	A:469-642	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3ti0A3	A:643-667,A:792-876	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3ti0A1	A:668-791	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e3ti0D4	D:298-468	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3ti0D2	D:469-642	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3ti0D3	D:643-667,D:792-876	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3ti0D1	D:668-791	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e3ti0D4 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3ti0D3	D:X-1/2,-Y-1/2,-Z->D:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3ti0D1	D:X-1/2,-Y-1/2,-Z->D:x,y,z	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e3ti0A2	D:x,y,z->A:-X+5/2,-Y-1,Z-1/2	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3ti0A2	D:x,y,z->A:X,Y,Z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3ti0A4	D:x,y,z->A:X,Y,Z	Ribonuclease H-like	Interaction Interface Pymol
e3ti0A2	D:X-1/2,-Y-1/2,-Z->A:x,y,z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3ti0A1	D:X-1/2,-Y-1/2,-Z->A:x,y,z	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e3ti0D2	D:x,y,z->D:-X+3,Y-1/2,-Z-1/2	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol