| UID: | 000150331 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1m6yA1 |
| Range: | A:113-212 |
| Ligands: | CTN PG4 SAM SO4 |
| PDB: | 3tka |
| PDB Description: | Ribosomal RNA small subunit methyltransferase H |
| UniProt: | P60390 |
| Hsap BLAST neighbor: | A6NJ78 |
| Species: |
Structure of domain e3tkaA1
Domains in the same chain:
| e3tkaA2 | A:8-112,A:213-313 | Rossmann-like | Rossmann-related | S-adenosyl-L-methionine-dependent methyltransferases |
| e3tkaA1 | A:113-212 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
Domains in the same PDB:
| e3tkaA2 | A:8-112,A:213-313 | Rossmann-like | Rossmann-related | S-adenosyl-L-methionine-dependent methyltransferases |
| e3tkaA1 | A:113-212 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
Structural contacts of domain e3tkaA1 of H-group "SAM/DNA-glycosylase":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3tkaA1 | A:x,y,z->A:-Y+1/2,X,Z-1/4 | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e3tkaA2 | A:x,y,z->A:-Y+1/2,X,Z-1/4 | Rossmann-related | Interaction Interface Pymol |
| e3tkaA2 | A:-Y+1/2,X,Z-1/4->A:x,y,z | Rossmann-related | Interaction Interface Pymol |
| e3tkaA1 | A:-Y+1/2,X,Z-1/4->A:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e3tkaA1 | A:x,y,z->A:-X+1,-Y+1,Z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e3tkaA1 | A:-X+1,-Y+1,Z->A:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
