ECOD: domain e3tr5D13

Domain ID e3tr5D13

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: GTP_EFTU

UID:	001212773
Type:	Automatic domain
Parent:	e2c78A3
Range:	D:3-276
Ligands:	GDP
PDB:	3tr5
PDB Description:	Peptide chain release factor 3
UniProt:	Q83DC7
Hsap BLAST neighbor:	Q96RP9
Species:	Coxiella burnetii

Domain
In chain context
In PDB context

Structure of domain e3tr5D13

Domains in the same chain:

Download Pymol

e3tr5D13	D:3-276	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3tr5D15	D:277-386	cradle loop barrel	RIFT-related	Alanine racemase-C
e3tr5D14	D:387-525	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like

Domains in the same PDB:

e3tr5A7	A:3-276	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3tr5A9	A:277-386	cradle loop barrel	RIFT-related	Alanine racemase-C
e3tr5A8	A:387-525	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e3tr5B4	B:3-276	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3tr5B6	B:277-386	cradle loop barrel	RIFT-related	Alanine racemase-C
e3tr5B5	B:387-525	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e3tr5C13	C:3-276	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3tr5C15	C:277-386	cradle loop barrel	RIFT-related	Alanine racemase-C
e3tr5C14	C:387-525	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e3tr5D13	D:3-276	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3tr5D15	D:277-386	cradle loop barrel	RIFT-related	Alanine racemase-C
e3tr5D14	D:387-525	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like

Structural contacts of domain e3tr5D13 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3tr5C13	D:-X,Y-1/2,-Z->C:x,y,z	P-loop domains-related	Interaction Interface Pymol
e3tr5C14	D:-X,Y-1/2,-Z->C:x,y,z	EF-G C-terminal domain-like	Interaction Interface Pymol
e3tr5C15	D:x,y,z->C:X,Y,Z	RIFT-related	Interaction Interface Pymol
e3tr5D14	D:x,y,z->D:X-1,Y,Z	EF-G C-terminal domain-like	Interaction Interface Pymol
e3tr5C14	D:-X-1,Y-1/2,-Z->C:x,y,z	EF-G C-terminal domain-like	Interaction Interface Pymol
e3tr5B4	D:x,y,z->B:X,Y,Z	P-loop domains-related	Interaction Interface Pymol