Domain ID e3u1kB1

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: RNase_PH
UID: 001656460
Type: Automatic domain
Parent: e1e3hA6
Range: B:365-503
Ligands: CIT
PDB: 3u1k
PDB Description: POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL
UniProt: Q8TCS8
Hsap BLAST neighbor: Q8TCS8
Species: Homo sapiens

Structure of domain e3u1kB1

Domains in the same chain:

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e3u1kB4 B:43-183 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3u1kB3 B:184-285 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3u1kB5 B:286-364 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e3u1kB1 B:365-503 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3u1kB2 B:504-598 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3u1kB6 B:599-668 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)

Domains in the same PDB:

e3u1kA5 A:43-183 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3u1kA1 A:184-285 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3u1kA2 A:286-364 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e3u1kA4 A:365-503 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3u1kA3 A:504-598 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3u1kA6 A:599-666 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e3u1kB4 B:43-183 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3u1kB3 B:184-285 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3u1kB5 B:286-364 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e3u1kB1 B:365-503 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3u1kB2 B:504-598 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3u1kB6 B:599-668 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e3u1kC1 C:40-183 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3u1kC2 C:184-285 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3u1kC3 C:286-364 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e3u1kC5 C:365-503 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3u1kC4 C:504-598 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3u1kC6 C:599-668 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e3u1kD3 D:43-183 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3u1kD4 D:184-285 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3u1kD2 D:286-364 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e3u1kD5 D:365-503 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3u1kD1 D:504-599 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3u1kD6 D:600-668 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)

Structural contacts of domain e3u1kB1 of H-group "Ribosomal protein S5 domain 2-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3u1kC1 B:X,Y,Z->C:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3u1kD6 B:X,Y,Z->D:x,y,z KH-domains Interaction Interface Pymol
e3u1kD5 B:X,Y,Z->D:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3u1kA3 B:-Y,X-Y,Z->A:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol
e3u1kA4 B:-Y,X-Y,Z->A:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3u1kA5 B:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol