Domain ID e3u4eJ2

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  • A: beta barrels
  • X: V1/V2 domain in HIV gp120
  • H: V1/V2 domain in HIV gp120
  • T: V1/V2 domain in HIV gp120
  • F: GP120
UID: 001822818
Type: Automatic domain
Parent: e4tvpG2
Range: J:128-194
PDB: 3u4e
PDB Description: V1V2 region of HIV-1 on 1FD6 scaffold
UniProt: Q1PHM9
Species: Human immunodeficiency virus 1

Structure of domain e3u4eJ2

Domains in the same chain:

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e3u4eJ1 J:119-127,J:195-245 beta-Grasp Immunoglobulin-binding domains Immunoglobulin-binding domains
e3u4eJ2 J:128-194 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120

Domains in the same PDB:

e3u4eA1 A:2-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3u4eA2 A:114-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3u4eB1 B:2-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3u4eB2 B:108-209 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3u4eG2 G:118-127,G:195-244 beta-Grasp Immunoglobulin-binding domains Immunoglobulin-binding domains
e3u4eG1 G:128-194 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120
e3u4eH1 H:2-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3u4eH2 H:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3u4eJ1 J:119-127,J:195-245 beta-Grasp Immunoglobulin-binding domains Immunoglobulin-binding domains
e3u4eJ2 J:128-194 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120
e3u4eL1 L:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3u4eL2 L:108-210 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3u4eJ2 of H-group "V1/V2 domain in HIV gp120":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3u4eG2 J:-X+1/2,-Y,Z-1/2->G:x,y,z Immunoglobulin-binding domains Interaction Interface Pymol
e3u4eG1 J:-X+1/2,-Y,Z-1/2->G:x,y,z V1/V2 domain in HIV gp120 Interaction Interface Pymol
e3u4eA1 J:X,Y,Z->A:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3u4eH2 J:x,y,z->H:X-1,Y,Z Immunoglobulin-related Interaction Interface Pymol